NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306921_10011112

Scaffold Ga0306921_10011112


Overview

Basic Information
Taxon OID3300031912 Open in IMG/M
Scaffold IDGa0306921_10011112 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9612
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002596Metagenome / Metatranscriptome544Y
F015282Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0306921_100111121F015282N/AGYLIGWVINPDTERPIKYDGLTGSAILRDGSGATQSYEAFAIQADRNLADRAEIATDIDPRTGIPALIFDGGAGHYQAVVGAIPADLEYHRLTGPLASGAASLILLTLDVRLNRPNYPTFVDLDFDSGEGVQASTGWNFRCWTEIEHPNIGANFTLVGARTRDAVVISGRAAKVPFGGVSDIPGPVTLLGLVPTDEGRGGRTMDPAYIVQKLDGGRPTTVLVPFETTEHAVR
Ga0306921_100111122F002596AGAAGGMRFKIKGARLAGLLVPALALAAPAFAQVRDTTLSDATEPGSVIVFPKFIKGTVVLPEGGAAPVSELEIGVACPKGVVCPEHEPVKIRFHWVCGTTEKDLAGSFICPEVNFDVTATVWEKIILVPDGSFAGVSTKTVPPAPCPAGYLIGWVITPSSDTPIKFDGLIGDAHLRPGSAGSAPIGSPTALASYNAIPIQADPALANGAAVSTNGNGALMFDGAAGHYQAVTGQVAGDVRYTNLTTGPTFTLGALTLLTLDVKSNRPNNPVFVDLDFFGGNPSAIGNENQLSTSTEFICWGEIPLTALAGGDLTTALMGREGVFASTNVAKVGIFGITDETGPTTLLGLSETLEGGVFPPTAPWPRTSFTGLFNSSVPVPTRFLPSN
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