Basic Information | |
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Taxon OID | 3300031911 Open in IMG/M |
Scaffold ID | Ga0307412_10116337 Open in IMG/M |
Source Dataset Name | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1918 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.5 | Long. (o) | -121.7 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F020506 | Metagenome | 223 | Y |
F083867 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307412_101163372 | F083867 | GGAGG | VTFPTDPRSPAGGWQATPGQPIPRAARQPAANGLLLVIVLLVWFSPLSIVVWLLGQAVILLQRRWHWWRFTLASLAAIGLVLAVTGPEEALRRHSFVPQHFWQYVALHFGFGPPGTEVTVGQFLWDLTATQIWLAVPVGLLAASLSVWSAERSAGGAEWSPFVRCRQRIDQRTRDRRTARLLAKPHEHKLTAALGIALDGDLASWRQGRYVVPPAQLRGKAMAVVGAPGAGKTVTLLRLAYLAGLLGRKVCFVDCKGTDPTLVPALIAAYRLGNPQARIGCWPQTAMDMWRGTPAQVQSRLLAVEQFTEPFYQRVASAGLRLALTAPDMPPSTAATSCCAAWTSTSWPPCGRAAPSS |
Ga0307412_101163373 | F020506 | N/A | PGSPRIEGQRGETTLRDVLDRWEDRGLVDRDRLLGHLWVAPTAKALRLVGLDVRAWSFVVPQLPHVQAVGIVRLSLEPSIPAGGRWLSERELRRETGKSDGPDGAIQLPDNPDTLGGLGLYGEDVDPLPKRIAVEVELTRKGAARLREVWTRPRHGRWTRTVYYAPPEVAGYLAGQLQRIRPRHPIQVHPLPEVAGTTYMRPGGTS |
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