Scaffold Ga0306923_10171556

Overview

Basic Information

• Taxon OID: 3300031910
• Scaffold ID: Ga0306923_10171556
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2477
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001875	Metagenome / Metatranscriptome	623	Y
F026513	Metagenome / Metatranscriptome	197	Y
F073745	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306923_101715562	F073745	GAGG	MSEPMRDPMRRHLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Ga0306923_101715563	F001875	AGGAG	MTEQNQAQDLLATLRDALQQLGFNLELTRSGVDGVAGQAERIRDSVAALCDLWQREDTSVGIEMLVDAAVDFLTAFRALEAGLLDAQTEVDTLEEELADDAGHDA
Ga0306923_101715564	F026513	AGGA	MPTPSLLSPHERGKRWRQEQVQQMLAANAVALAPLRADGEPACSWGTGPETGTTLYVRLDSDPEPKVLRFRRTMIADCGAGRYCSQQAATMFIRRTLQKMGIFHLVTNGVSMLQTI