Scaffold Ga0306923_10091167

Overview

Basic Information

• Taxon OID: 3300031910
• Scaffold ID: Ga0306923_10091167
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3429
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047418	Metagenome	149	Y
F055353	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306923_100911676	F055353	AGGA	MTTWRYQLFVISVGAQAGADVLGHQGLQDQLNDLGREGWELTAVTDAGDAKIFILKQPDIVDPLAL
Ga0306923_100911677	F047418	GGCGG	MHKFKIGARLFPTRLDVREGAYVVIKRLPMHDGEFQCQIKSLTEPDER