NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1002656

Scaffold Ga0272421_1002656


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1002656 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9746
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F008169Metagenome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10026563F002432GAGMIEFSENFNIFSIISMTLFYVNKSFHSRMSFDSDTTDYKTTYERLEARKANDIIIQMKELFIFDCQQLKKTKQIIKAQINKHRRDIIYEVDDXIXLFSRNIKTTRSCKNLKDKQLKLYQITVKVEIFYHLHLLISMKQLHSMFSLKLLRSYFNDLLSEQHSESFRFLTIEDDEHXKIDDILNFKXYQDQIQYKIKXTRLDRDDEXYYVDKEEFKSSKEVLVEFHKFYSDKSH
Ga0272421_10026565F008169N/AMFSRSLTEERFKEFRNRFSQISDADSLKSRTKSLSAASFIHEDDESFAEMIIFFVFYEIXKARSLALDEETDQLYELDKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNEXVKLSYVHSRLFNDAAEITQARRERDCVNLYRIIDDLLKELAQLFDDLNKKVNFRRKYYNLVQEFKKFNEFYTQFQRLSFYLDYYEKQLIVDLKDKIHSRLLFVXIDQLVQSDFLKEIHFYLIRLNNDQRVIREIKDKIKRVNDLSKTIFHRATVVTQSVDYSKSDQLKSRDAILTSVKEADILVESCFICHKSDHSSKECLDRSTRINAVNNEYDRFDFDSNFDSKN
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