NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1001802

Scaffold Ga0272421_1001802


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1001802 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12101
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051591Metagenome143Y
F058565Metagenome134Y
F076668Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10018021F051591N/AMLDAIALYFVYXSSRVISLRIVTTDLDLLSCASRKDKTDSDLIRNAVLLXNNVVLCAIFKRKRVRFRFLRQYAVFCAVLKSIDDLFFSCEFALRFINQITVXIDDSFFCVDELSFRRRFWPAXARKISIFDFXLATQSPVKLLSRMKACFDRTIVLYNLPIDLVYHMLR
Ga0272421_100180210F076668N/AMTCLLLTSSFLAHASACKTSKSSMHSTDHYAIKETSVFKSTTTTKKIMHMSNALSTDILMLCNRKDATNQALLRCVKFENIRRLQKISFSKXSSKGXLERLCMIMLKRTCYNMIFAFSALSXVLFKKSLKTLCASLXKVSALLFRIITLVVEFSLTFCSMQTSTXXQFMSNASSFKIEIRDLXRISXXILMSCFSRQTRKCLSSSVK
Ga0272421_10018025F058565N/AMNCSNADLKTIVDSSQENKDARSKHSRNNEENVANIIDLLIKISTLEKEKSKDHS
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