NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1001279

Scaffold Ga0272421_1001279


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1001279 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14939
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F064252Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10012793F009377AGAAGLNTEEKITNALLFDHEVIKISISTELNAXISAYEADDIIVFIKYICQQHDTEIKIHNDMIQMLEDVNEINITLKITQTRLHKENRDKNVIIHHLEVASSRQSTSISEDQFSKSIKLLNSSLFEDSSQNVNNXLSRMXNKLKANKNHFSIKELKIVYIESRVSKAAIKQIASRMQDIFLNSFLEVEEVLSIMNKMYDDFNYHHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELKYNNETLLNDLQHKINSNL
Ga0272421_10012795F064252GAGMLIELRDQXNMTLKLNEQXIDLQVDHIKRLNELEINQTTIDIQEKIIIELXKKVLSLKKRQRSENHLRSQQSMKSXASIENHTRRKSFTLFNNDHHMFFKFLNSFIFIDEDELTXDSXRVKIDDKLQTNVDHFNNENICIVHMIFKLEDDAAEYIFAQRXHDALHSYILIDELFEHLKEIYNELNKNQKCHHKYNGLRQADKSFNVFYFNFMKLFSYLEYDDCTLMNDLQNKINIYLQNVLSVCSKNFTSLTRLRIFLQDVNSKQQVNHQLCSERCIVIIKVTVVSDKRVTSLSITTSIINYVKSTVASVHFKLV
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Institute for Fundamental Biomedical Research
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