Scaffold Ga0272421_1000616

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000616
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24716
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019260	Metagenome	230	Y
F020121	Metagenome	225	Y
F023763	Metagenome	208	Y
F038009	Metagenome	166	Y
F048018	Metagenome	148	Y
F074202	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100061620	F074202	N/A	VYEXSLFTCXKEIYMYVEKCLQLLYCXLRSQSLSLTKLLEKCVSNFMKTVDCKMNCKMNCKTIYVSFLLMSFCLLCSNNAFNLALFLNDDLFLKLVISKLRLHVETELSFKEEVILRCSFFTAKDDDLDSSFNLKIATNFIKFLXFTIFYNDXSSFFNLFLSVKCDVTRSKXADAENQAFESEVVVDLAVLSNVDNMSSSKFENLDCEDVIKRSTSIESLFFSSDIVN
Ga0272421_100061621	F020121	N/A	MKKLTEHLHDEMLIAQIIYKFNVNLFHHSCFKYFIEDEVXLNACNLSIAHLTVKLDDHNVDLFKIKRVFENNFLIIELNLSAFMKIHSIFHVILLSHIASDLLSNQHQKSQELIIIKNDKRFXYVNSILNFKHDRHYNSSLLKYYINXEDHFFTXKSFHLLNNCDQALNEYYFINSVIKESHVLSCVISQCQCQELLVQSSSFQLNLDLTQILFKFNSDILFKSDLNVT
Ga0272421_100061622	F019260	N/A	MIQELKSISRINIKSKKYLNSELYIEERENKLNQFIFELISKLKLNANHYSTFESRLLYEYSRLSRNAVAQALSHMIAQHDKLVTIEQLVVLLRQVFDDSDKQEITQXFISVLRMXNRIFIEYLFDFQQHINAIEYDVVIRKFNLKNKLFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYLVKYATFSTGLKATISSSKNLMNLSIVNMKKRDSLTLKKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLQVISLFALAISIDNLAFDTSFVLRKV
Ga0272421_10006165	F038009	N/A	MSSMIKASSSQLNYKRLIKLICLKDNRSSKEKRILTLDFXXVFFLNDLKNTTRSFLFQMKDKTEXDLFLVNELNISXLFISKREIILLLVSRXKTELLLMSELRTELLLVSELKTELLLASKLKTELLLSSEXETKLFLASELNAELLLVSNL
Ga0272421_10006167	F023763	N/A	MISDVIVKFRQKLTSTSLMMTQLLNXHEILKIFVIHDHFDRINKVFKLXSSFLESANNDHEFFIVDFVVTLNXVMLFXKVSDXIKNLILIILIENVFEHIVQSIDFYHNLVIXIIMTKNNLKSEDFLKNVECNLIFLRLDKEYIFSDEMSERSNYSTIIINESFIKVREI
Ga0272421_10006168	F048018	N/A	MTLSXVSXMIQRRSLSELSMYFLSXKYRXFLCSSHSTKEILLXCRASLQSTSIIXIANLSLISTCFHNVXVKMSAESSLRFRTSXSSXDLMFSTSNSSISRFMRTKICKNAEIVENKCNXTEFKAMICIXSFMILMLKTSRARFSTILRSKT