Scaffold Ga0272421_1000561

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000561
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26081
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (48.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048019	Metagenome	148	Y
F055319	Metagenome	138	Y
F102179	Metagenome	101	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100056120	F102181	GAG	MIIVHVHALYQTLLSCIQLIFVSLIFKYVKKLLESKSNEDNDRICKEVSDKRRLIIQDLCDDLNYHRKRLRIQLYIN
Ga0272421_100056122	F055319	AGCAG	MIEVRMKRLRLVNKMICIQISEHDLAQKLNFFHEQQDFFIYIDDIIVIDVHDMQSEELLI
Ga0272421_100056129	F102179	GAG	MFVHSVNENTSTCSAVHVRSMLLRIMTLAMQETHLDEVHFSRSKIFQFESTTLKSTDVETSTHKDRNVTEKQLNSVAETVDCKQLISHAIVRVLTIHEMIYNFSSKFVVKLIKILQQEDEFAVRLKADETTSI
Ga0272421_100056131	F048019	N/A	LFFAQVFAKALQDKSTVYALVMINVVKESIVEHQVKVMNNVMSCITNALEMQTLLVELKEYEDVFLTESVDKLLLHEDHDHAIEIIAKSSYESLYNLLNTELATLRQYLNDVLAKE