Scaffold Ga0272421_1000484

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000484
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29647
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (54.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F048685	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_10004843	F005901	N/A	VISRLEDDAAEHIFVRHRHDASHSYISIDELFEHLKEIYDELNKNRKCHRKYNALRQADKPFNVFYFDFMKLFSYLEYDDRTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIAKVTVVSDKRATSLSVTTSIISYVKSTISSISESARSSIICYICKTLDHLFKNCSQLNKINTSASRAFISRLHEIVISKNKENEKMSFENSEAKN
Ga0272421_10004844	F000597	AGG	MKDVLISSTTSRLDDSFASESLTTECVLSNNEISYSLKSLIDIEAVDYSFIDEVTAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITRLNQHQMILGKT
Ga0272421_10004847	F048685	N/A	MYRSGKQNIKVDALTRRADVVLRDSEDERVRYQRITILTSNRMKMADLEENISESIYKQILETNRIDENCTLLREAIARDETQYEGIKLKNCRTQNEILYHDSC