Scaffold Ga0272421

Basic Information
Taxon OID	3300031909 Open in IMG/M
Scaffold ID	Ga0272421_1000368 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031909 Open in IMG/M

Scaffold ID

Ga0272421_1000368 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37795
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (22.92%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

37795

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (22.92%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009377	Metagenome	318	Y
F035571	Metagenome	171	Y
F041516	Metagenome	159	Y
F070710	Metagenome	122	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100036817	F102180	N/A	MMIAIRINXELNIRLRESTLVITHYEELKELIARMKHLADVVTKNQECHEKIYKVYSDSQTSLKTVKAMISTKDQTHLQXVQIMHESIQF
Ga0272421_100036822	F070710	N/A	MTKQFFLXILQYNIEKLLKIQESFLINREVRKFDIVIIQKQECNINDLQSFSSAHNFFHLVKNSSSQSRTCIYVNKYLRLNQXTVETAKSDIYLIKILTCNTDDKMQMLRLLNIYNLNSLFITFTERLSTISRLNELLKNDYE
Ga0272421_100036826	F035571	N/A	MYISIFNISMLTLLNIFATXCIVXFCKVSSLHFLSDSFFFLSRXCQIDASNAISDLITVEYTCLTFVKIVSHVKTFKXLSASILVTXLTSIYXRCASHHSVMFSXIFKTCTSDFDLIIKLSIYMLVIMSNFLNFLVKCVSSYFSDANVVSXIEAHFMQTSYILLSVLQISSINLS
Ga0272421_100036835	F041516	N/A	MLQTLTDDTQMIQKVIYIHEAYNLLLRNHEVIHEKESLSDIKKTLYMLRECILVEDFNLHHLTXKKSFYSR
Ga0272421_100036840	F009377	N/A	MTRSTELESVSIACYELXNTKRKSLLSQNXTASEEEDMNASLNTEEKNTNVLFFDHKMIKISISTELNAXINIYEADDFIVFIKYICQQHDIEIKIHNDMIQMLNDVNKINIKLKATQTTLNAVQMHLQKEMKKKNMIIHHLEVTSSQLSTSISKDRFSKSIKLSDFSLFEDSRQNVNNXLSXMXNKLKMNKNHFSIEEIKFAYVKSXVSETMIKHIAFRMRNMITNSFLEAEEILLIINKMYNDFN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272421_1000368

Overview

Ecosystem & Geography

Associated Families

Sequences