Scaffold Ga0272421_1000357

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000357
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39286
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F008735	Metagenome	328	Y
F023763	Metagenome	208	Y
F028667	Metagenome	190	Y
F048685	Metagenome	147	Y
F074204	Metagenome	119	Y
F087979	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100035710	F074204	N/A	MIVFCILHQAQSKVFILILIDSEIFAYVFMNKFFMQQHHLLLYQLTHSCRLQEFDDQVTLIDDIIHVVKITMILNEHIEKLFFYIIELSQYFIIMSLS
Ga0272421_100035712	F008735	N/A	VNLLIYDESXLNIDDLNSMKKIMIIIHVHALYQTLLSCIQSIFVFLIFKYVEKLLESRSDENNDRVHKEVNDKKRLIIQDLCNDLSYHHKRLRIQLYINXRTENNEXEXDDDIMLSNLILKLLHYMKDFNXIFNHTLSELFDNMLIIDQEIVKXLYLSERIIRXDFNV
Ga0272421_100035713	F087979	N/A	MKEKNENSTFIYMNXTESRLNNSFIDLKLQKFAHMIETKLLKLN
Ga0272421_100035716	F048685	AGCAG	MRXVQKLTEFNFRIMYXSDKQNIKINALTRQADVVLKDSEDERIRYQXITILTSNQMKIADLKKNINESIYKQILETNEIDENCTLLREAIARDET
Ga0272421_100035719	F000597	N/A	MKDVLISSTTSRSDNSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIEFLTLNKAKSIREFNDHYAKKLITHVIYSNLTVQDHMINTA
Ga0272421_100035720	F028667	N/A	MARDSESVESRTARLLRSIASRRVSLISFDASAKSQNVAISXDINTNQQLRQXAIDQSDEIIKMLVELRDQRDMTLKLNEQXIDLQVDHIKRLDELEVNQTTIDTQEETIVDLREKVLSLKKRQRSANHFRSRQSTKSRASIENHTRRESFTLFGNDHHKFFKFSNSFIFTDEDESTXDSXRVKIVDHFDNENICIVYVISRLEDDAAEHIFARRQHDASHSYISIDELFEHLKEIYDELNKNRKCCREYNALRQADKSFNVFYFDFMKLFSYLEYDDCTLMNDLQDKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVVPDKRATSLSVTTSIISYVKSTISSTSESARSSIICYICKTLDHLFKNCSQLNKINTSASHAFILRLHEIIISKNKENEKMSFENSEAKN
Ga0272421_100035730	F087979	N/A	VKEKNESTTFIYMNXTKSRLNNSFIDLKLQKFMHTTEIIKTELLRLN
Ga0272421_10003579	F023763	GAG	MNFQNCLMLILISRIECISLFKKIFXAMCQSIQLIINLVEMISNVIVESRQKLTSTSLMITQLLNXHEILNIFMICDHLNRINKVFKLXSSFFESINNDHKFFIVDLVVTLDXVMLLXKVSDXMKNLIFIILKKNVFEYIVXSIDFYHNLVIXIIVTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMSKRNSYSTIVIDESFIKVREI