Scaffold Ga0272421_1000349

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000349
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40515
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (21.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales → Chaetomiaceae → Chaetomium → Chaetomium globosum → Chaetomium globosum CBS 148.51 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F104132	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_10003492	F104132	AGAAG	MNEILNSQIKNSQLEYLIKWTEIEENSXVKFANVMNVIEVMNVYHARNLDCSNKNSXIAYVQESSNFDESEN
Ga0272421_100034952	F001253	GAGG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKFKPIRRFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLDQHQMI