Scaffold Ga0272421_1000346

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000346
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40892
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (23.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019260	Metagenome	230	Y
F028667	Metagenome	190	Y
F044227	Metagenome	154	Y
F057012	Metagenome	136	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100034610	F044227	N/A	MMQLQTKSSDSKACIHALLELNASAIKNAMXYXLFELSNNHHDHERFQNSSKNDDENKASKTI
Ga0272421_100034611	F028667	N/A	MIRDNKSVESRTACLLKSTANRRVFLISFNASTRSQNVAISXNINTSQQLCQXAINQSDKIIKMLIELRDQXNMTLKLNEQXIDLQVNHIKRLDELEINQTTINTQEETIIELREKVLSLKKRQLSANQSXSQQSTKSXASIENHTXRKSFTLFNNDHHKFFKFSNSSIFTDEDESTXDSXRIKIDDKLQTNFNHFDNENICIVYVISRLEDDAAEHIFAQHQHDASHSYILINELFEHLKEIYNELNKNRKCCRKYNVLRQADKSFNVFYFNFMKLFSYLEYDNCTLLNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIVKVTVVSDKCATTLLSAVMTSIIDYVKSIIFSISESDQAKSSIICYICKTSRHLFKNCSQLNKIDTSASHAFTLRLHEIIISKNKENEKISFENSEAKN
Ga0272421_10003464	F098340	AGAAG	MIEVTVYXTLVKNKKIKIFSLIINKINKALSSVEDFTELNKMISIMSLNELKKKLLIVYHDFLNIFKRKKTIHLSSHQSYNYKIKIRKXE
Ga0272421_100034645	F019260	N/A	MSQFENISNTLLSTSLVSINEFITVAQFRTHVNNALEAXYTFLIKLQTXFNDIITQYINXVSVCQQEHEQTQIELKQFQINNEILSEMIQELKSMSRINIKSEKYLNSELYIEERENKLNQFIFELISKLKLNANRYSTFESRLLYEYSRLSRNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMRNRIFIEYLFDFQQHIDAIEYDIVIRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAMIHSVFVISTVLAYLFKYATLSTDSEATISSSRNLMNLSIINMKKRDSLIFEKHQHCMINHLCLYCDKSEHQTAICNSKLKI
Ga0272421_10003465	F057012	N/A	MSDDSFNFKSFTIDIILSSLKKIFRFLVLNLINIKVIDMTFIDKSLMLELYERFDIQSILLSKSKLIXLYDETFDXKLIIYTLYTLIIIQEYKNEMISLLITCLNQHKIIIENLXLKRNQILIDFTNDXLILLLKIQTLKSVVLKVSSQSAFYKSESSEICKMKXKNLNLIVTSMIILKRLMNQKSVNKFIESALIAKQST