Scaffold Ga0272421_1000338

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000338
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41882
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.87%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F023763	Metagenome	208	Y
F044227	Metagenome	154	Y
F052973	Metagenome	141	Y
F055318	Metagenome	138	Y
F071806	Metagenome	121	Y
F086377	Metagenome	110	Y
F104132	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100033812	F055318	N/A	MLRDDEALCVDRMQSFHDRADFDNLNVHVTSNLYADEKVK
Ga0272421_100033815	F044227	N/A	LRTKLSDSEACTHALLKLNASAIESAMQCQLLELLNNRCDHERSQSSSENDDENKASKAI
Ga0272421_100033819	F009580	N/A	MRRLRLVDKMICIQISERDLAQKLNFFHRQXDFFIYTDDITVVDIHDTQSEEFLIXTFFSDFARMLQLAIVAQLSLVANFLDFRNDQNLILNDDNDEA
Ga0272421_100033844	F071806	N/A	MKLQSQIIALNSVQLHLFLIISALLQILALMNLEIEEFDVENIKSQLNQDTLNLDEDSADTLTQTLXK
Ga0272421_100033845	F023763	N/A	MISDVIVKSRQKLTSMSLMMTQLLNXHEILKIFVIRDHLNRINKVFKLXSSFSESANNDHKFFIVDLVITLNXVMLLRKVSNXMKNLILIVLKENVFEHIVQSINFYHNLVIXIIMMKNNLKREDFLKNVECNLTFLRSDKEYIFSDEMSERNSYSTIVINESFIEVREI
Ga0272421_100033847	F086377	N/A	MIQHFXDQRQRISILDCDSVQTSIVHAEVKFFFKFLNEENKDDHLRVTDLNEIFAQILIQITTKF
Ga0272421_10003385	F052973	N/A	MFRDCARPERDVFVTREECDVGEQGVGERKGCWERKRVLSHI
Ga0272421_100033852	F008735	N/A	MREIMIIIHVHTLYQTLLSCIQSIFVFLIFKYVKKLFESRSNEDSNRVCREVNDKKRLIVQDLCDDLSYHHKKLRIQLYINXRIENNEXEXDDNIMLLNLILKLSYYAKNLNXIFDHTLSELFNSTLIIDXEIVRXLHLSKRVTRRDFNVXKRCRKCRSFIMSKTELD
Ga0272421_10003387	F104132	AGAAG	MNEILNFXVKNSQLKYLIKXTEIEENSXIKFANVMNVIKVMNVYHVXNFDRSNKNSXITYVQESNDSEYESKN