Scaffold Ga0272421_1000322

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000322
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45057
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F021026	Metagenome	220	Y
F052973	Metagenome	141	Y
F070712	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100032215	F021026	N/A	LIDSEVFAYVFMNKFFAQQHHLFLYQLIYSRRLQEFDDQVTLINDITYVVKIIMILNEYIKRLFFYVIKLSQYFNIMNLSXLYHHVIDVNFKHNIFILSFFFCFNHYCSSFVKIYDLNQQEENFSFKINC
Ga0272421_100032219	F008735	N/A	MIIIHVHVLYQTLLSCIQLIFVFLIFKYVKKLLESKSNDDNNRIHREMNDEERLIVQDLYNDLNYHYKKLRIQFYINXRTKNNEXRXNDDIMLLNLILKLMHCVKNLNXIFDHTLSKLFNSMLIINQEIVKXLYLSKRITKRDFNIXKRCKKCKSFVMSETELN
Ga0272421_100032227	F052973	N/A	MFRGCARPERDVFVTREGCDVGEQGVGERKGCWGRKRVLGHIWAKPGAN
Ga0272421_100032240	F070712	GAG	MSDIKKKKSLNKVRKQVIFAEKRDSLNFYRKIEVTTLVDHSKSRGTILTNVKDIDLQAEICFTCHKSGHTSKECSDRTSRVNALEDDEFDXSTSNSESDSDSKN