Scaffold Ga0272421_1000289

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000289
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50121
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (21.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021216	Metagenome	219	Y
F038008	Metagenome	166	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100028950	F021216	N/A	MKSRMKSNAMRRKHHELDKAFRIHERSNDDHLNDTLNEYTESISSCDIIKESDEREEK
Ga0272421_100028951	F038008	N/A	MKXSHFYMMILXSESLRIVIVANKKMSINQHHFDTFTLKQRVYLNNSDNRKNVTMIAMKINXELDKRLRESTLIITHHEELKELIAKMKHLADVVTENQEYREKIYKVYSDSQTSLKIVKVMISTKNQTRLXXVQTAHESI
Ga0272421_10002897	F094624	GAG	MQNDXAKXLSEVEFIINNASLLITLTSFFLINLNQNLHLNFKFFESLLKNLTFQAXNKLINVEKFIKKMKKLTKHLHDEMLIAQIIYEFNVNLFCRSCFKYFDEDEVXLNACNLSIAHFTVKLNDHNVDFFKIKRVFKNNSLIIELNLSIFMKVHSIFHVILLNHITSDFLSNQHQKL