NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000287

Scaffold Ga0272421_1000287


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000287 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50636
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (22.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F035571Metagenome171Y
F075493Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10002871F009377N/AMNARLNVEEKNINEXSFDLEVIKINIKKKLNAXILNDEADDLIIFIKYMTHQHDIEIEIHNDMIQMLNDVNKINIELKAINIELKVMQTTLNAVXMCLQKEMKKKNVIIHHLEATSSRLSTSISKDXFLKLIKLSDSSLFEDSKQNMNNXLFQMQNKLKMNKNHFSIEEMKIAYVKSRVSEMMIKHIALRMKNMITNSFLEAEKILSIINKMYDNLN
Ga0272421_100028726F075493N/AMXSVQAMHEYMLRRLMTSFTITSQVIHVXNISKVQISIQIYAFNSDVHCRSAFCFLKIITHLYHLIAQMQSLCXDCIDICNAFSVLFSSLISLIFVILRYYDVIACXNHCEEESASSASXLYLHIFLNEDIQKYYFLDDELARNDVINSHQTNVY
Ga0272421_100028727F035571N/AMTXLTLIKRTCINSHACLISCVQSLIQLCNVILFCSMFRXTCNKFMYVSVFKVSMFTLLNASATXCRVXFXSVSNLHSLLNSSSFLSRXCQTDALNAISDLITAEYTCFAFVKITLYVKTSRXLSVSIFVTXFISICRRCAFHCSFMFSCIFRTRTSDFNLIIELSICMLVIMLNLFDFLVKCVSSYFSDVNVVSXVQAHFAQTSCALLNVLQISSVNLS
Ga0272421_10002873F075493N/AMQSVXAVHEYMLRRLMTSFTITSXTIHVXNISRVQISIQIYAFNSDVHCKNAFYFLKIITHLYHLIAQMQSLCXDCIDICDAFSVLFSSLISLIFVILRYCDVIICXNHCEEENVSSASXLYLCIFLNESIQKYYFLDDEXVRNDVINSHQMNVY
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