Scaffold Ga0272421_1000265

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000265
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56193
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (14.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009377	Metagenome	318	Y
F021026	Metagenome	220	Y
F064254	Metagenome	128	Y
F080690	Metagenome	114	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100026514	F064254	N/A	MQELYESVSSLFSLSIIXLFDDITAXNXFSMLVNNIIQMIIIAALTISKSFLKFVMFFSHCIAFHSTFHLKHVNKMCLIDIQSLSHLHVVIVILNTRLSCRNXLKSIFLMHNCISNALXDFAXSLYRCRCXXVISDVKYQKXVALNLFLQTILHVCLICFCMTFVIGKEXQXQILALLVINISNIHLISCFRFASLLAETYS
Ga0272421_100026519	F009377	N/A	MTRSTESESVSISRYDFQNVRKESLLSQNQAASEEENMNASLNTEEKNMNTLFFDHEMIKISINTELNAXISTHEADNIVVFIKYICQQHDIEIETHNDMIQMLEDVNEINITLKITQTRLQKEVKNKNVIIHHLKAASSQQSTSTSEDRFLKSIKLLNSFLFKDSTKNVNNXLSXMRNKLKTNKNYFSIEELKIAYIKSXVSEAAIKHIASXMQDIFLNSFLEVEEVLSMINKMYDDFNHYHMT
Ga0272421_100026530	F080690	N/A	MKSFHNLSIDDERVVEQFAQSVIENSVEIFRIMRELQNQVXQHDVIISFSFIILSSSIYIELNSQSLAMIAQIITQILNNQSSLVIHFSANSVVVFIASRFKKLLDIFEYERNKDXLNAXEQSLIQRINMNDDHYLFHRVKIIYVKSXLIIDKKIHNLMSQYRVNDLCIIFIFADXXHKLRHYCNNSFKTEETHLYLRETLKQSMNNFVDYYNFFYQKKECFLMKDFSLIDCLKRNVNYFTQVIVFFX
Ga0272421_100026531	F021026	N/A	MIIFCILRQAQSKVLALALIDNEVSAYVFMNKFFTQQHHLFLHQLIHSHRLXEFDDQVALINDITYVVEITMILDEHIERLFFYVTELSQYFIIISLSXLHHHVIDVNFEHNILILSFFFCLNHYCSFFVKIYDLNQQEENFSFEVNKVAFSQSCSQFTHKKQLSSRIIHKKQFSLQIAHKKQFSLQIAHKKQFSTQFACKKQSSFSFA
Ga0272421_100026553	F104134	N/A	MFIIVHILCVNTAKIQRVTHVELAISFAHIXVFFRFAQASELTAXREISSLLSLXSDMIKFLXSVNTLVILCKICSINFFCISFISFLFIILIMTSLFLQSDNRSFLKCYSLVIVSSLVTFTHDVIFIKRRVLFCVCNCLLSSXFDVFNFCTFFAMNAFXFMXCFSSESSRRCXISFNAISFYEXSLLFSFSNVDIFISKSIMLVMFSSSLCKCFNLTSLFSCNELTIIFESALLQFMQFIVV