Scaffold Ga0272421_1000196

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000196
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79075
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (19.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F020121	Metagenome	225	Y
F028667	Metagenome	190	Y
F038009	Metagenome	166	Y
F094622	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100019626	F008735	N/A	VSFLIYDESXLNINNLDSMREVMIIVHVHALYQTLLSCIQLIFVLLIFKYVKKLLEFRSNKDSDRICKDMNDKRRLIIQNLCDDLNYHHERLRIQLYINXRIENDKXEQDNDIMLSNLILKLLHCAKDLNXIFDHTLSELFDSTLIVNQKIVRXLYLSERITKXDFNVXKRCRKCRSFIMSKTELD
Ga0272421_100019632	F020121	N/A	MKKLTEHLRDEMLIAQIIYEFNVNLFHRSCSKYFIEDEVXLNACNLSIICLVVKLNDHNVDLFKIKHIFKNNSLIIELNLSAFMKIHSIFHVTFLNYITSDSLLNQHQKSQKLIIIKNDKRFXYVNSILNFKRDKCYNSFLLKYYIDXKDHFFTXESFHLLNNCEQAFNEYHFVNSVVEESHVLSCVIFQCQCQEL
Ga0272421_100019645	F038009	GAG	MIKALSFQLNYVKLYRKLIELICSKNNRSFKEKRISTLDFXXVFFLNDLKNTTRSFLFQTRNKIEXDLFLVNELSISXLFINEREIILLLVSKXKTELLLTSKLRTELLFMNELKTELLLSSEXETKLLLASKLNAELLLVSNL
Ga0272421_100019654	F020121	GAG	MKKLTEHLHDEMLITQIIYKFNVNLFYHSYFKYFVEDEVXLNACNLNIVHFIVKLNDCNIDFFKIKCIFKNNSLIIELNLSAFIKIHLIFHVILLNYITSDFLLSQHQKSXKLIIIKNDKRFXYVNSILNFKHDKCYNSSLLKYYVNXENHFST
Ga0272421_100019661	F020121	N/A	MKKLTKHLHDEMLIAQIIYKFNVNLFHCSCFKYFIEDEVXLNACNLSIAHLAVKLNDHNINFFKIKYVFKNNFLIIELNLSTFMKIHLIFHVILLNHIASDFLSSQHQKSXELIIIKNNERFXYVNSILNFKYDKHYNLFLLKYYINXENHFFI
Ga0272421_100019680	F028667	N/A	MTRDSESVESXTARLLKSTVSKXVSLISFNASARSQNVAISXDINMSQQLRQXAINQSDEIIKMLIKLRDQRNMTLKLNKQXIDLQVNHIKRLDELEINQTSINTQEETIIELREKVLSLKKKQRSANHSQSQQSIKSQAFIENHTRRESFTLFNNDYHKFFKFSNSFIFTDEDESTXDSXRIKINDKLQTNVDHFDNENICIVYVISRLEDDAAEHIFTXRXHNALHSYILINELFKHLKEIYDELNKNXKCRHKYNTLRQVDKSFNVFYFDFIKLFSYLKYNDCTLMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDMNSKQRVNYQLCSERCTVIIKVTVVPDKRVTSLSVTTSIINYVKSTISSISESARSLIICYICKTFDHLFKNYS
Ga0272421_100019695	F094622	N/A	MSISQHHLDIFTLKQKVYLNDNDNKENIMMTAMKINXELNKRLRKSTLIIIHHEELKELIVRTKHLADVMTKNXKYHEKIYKVYSDNQTSLKTVKAMILTKD