Scaffold Ga0272421_1000147

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000147
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98443
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (30.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F061399	Metagenome	131	Y
F074203	Metagenome	119	Y
F086375	Metagenome	110	Y
F096306	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_10001471	F008735	N/A	MREIMIIVHVHALYQTLLSCIQSIFVLLILKYVEKLLEFRSNEDSDKICREMNDEKRLIVQDLCNDLSYYYKRLRIQFYIDXKTENDEXRXNNNIMLSNLILKLMHYVKDFNXIFNHTLSELFNSTLIVDQEIVRXLHLSKKVTRQDFNIXKCCRKCKSFIMSKTELN
Ga0272421_100014710	F086375	N/A	MFTLFINSKSITSXNHGENXFNEIKEHYKRHNNNHVALFKXLHKLKLFNVXKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNASQ
Ga0272421_100014720	F061399	N/A	MSIIYKYVLIFVDHFIKMKHLVLTTFMKVEEVINYFYAHVXKYHNLLKFFISDXATQFIFNVXKHMCKMLKINVKLSMMYHFEIDDQIKRVNAVMKHYFQVFVNYMQNDXVKXLSKVEFIINNTSLLITLTSFFLINSSQNSCLNFESFESLFKNLMFQAXDKLINVKKFIKKMKKLTKHLRDEMLIAQIIYEFNVNLSCRSCFKYFVEDEVXLNACNLSIAHLAVKLDDYNVDFFKIKRVFENNFLIIKLDFSTFMKIHSVFHVTLLNHITSDFLLNQRQKSQELIVIKNDKRFXYVNS
Ga0272421_10001474	F009580	N/A	MIEVRMKRLRLVNKMICIQISECNLTQRLNFSYEQQDFFIYTDDITVVNVHDMQSKKLFIXAFFNNFTQMLQFAVVAQLSLIADFLDLRNDQSLILNDDNNKV
Ga0272421_100014784	F002432	N/A	MXKSLCKRLRITASLFTVYHSEIDDQSKRVNQNVERELRIYCNYMQNDXVKXISMMKFSDNFNIFLITSMILFYFNKEFHSXMSFNSDMTNYKTTHERLEARKADDIVIQMKELLNFDHQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSFRNVKTTRLRKDLKDKQLNLYQITVKVSIFYHLHLSVSMKYLHSMFSLKLLQLYSEDFLSKQHLESLKSITIKDDEHXEINDILNFRCYRDRIQYKVKXTDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSNKSR
Ga0272421_100014788	F074203	N/A	MSSHSFTEERFKEFRNHFSQISDADSLKSRTKSSSAASFIHEDNELFAETIILFMFYEIXKTXSLALDEETDQLYELDKQQEDEIKELKTRLQAKEITSSDSIYSERSRFQKIPDSSLFTDEKNSTXKNXYRKIQNKLEINVDLFSNEXVKLSYIHSRLFDDAAEITQARCKRDCVNLYRIVDDLLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFSEFYTQFQHLSFYLDYHEK
Ga0272421_100014799	F096306	GAG	MYDNRAVDSLIVDNDSNEERSCKDNSELYASMILFDIATLIATNVKIVFVESNDK