Scaffold Ga0272421

Basic Information
Taxon OID	3300031909 Open in IMG/M
Scaffold ID	Ga0272421_1000133 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031909 Open in IMG/M

Scaffold ID

Ga0272421_1000133 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	105741
Total Scaffold Genes	112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (58.04%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

105741

Total Scaffold Genes

112 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (58.04%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F061401	Metagenome	131	Y
F071806	Metagenome	121	Y
F074204	Metagenome	119	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000133107	F071806	N/A	MKLQSQIIALNSIQLHLSLIISALLQILVFMNLEIKEFNIENVKSQLNQNILNLDEDFVNILTQTL
Ga0272421_1000133110	F074204	N/A	MIVFCILRQAQSRVLTLALIDSEVFAYVFMNKFFTQQHHFFLHQLIHSRRLREFNDQVALINDIIHVVEITMILDEHIEKLFFYVIELSQYLIIMNLL
Ga0272421_100013312	F008668	GAG	MMKFSDNFNTFSITSMTLFYFNKEFHSRMSFDSDTTDYETTHERLEVRKADDIVIRMKELLNFDRQQLKKTKLIIEVQINKHKRNVIYEVDD
Ga0272421_100013315	F006206	GAG	LCKLDEILSKENYFEKSFLIDTHLISQNQSFSLHSLIDSDSVIYMIIHSNLVNKVCEKLKIQSISLTKKKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKL
Ga0272421_100013316	F061401	N/A	LNNDQRVIREIKDKIKRVDDLSKTIFHRATVVTQSVDHLKSDQLKSHDAILTNVKEADILVESCFICHKSDHSSKECLDRSTRINAVNNKYDRFDFDSNFNSKN
Ga0272421_100013318	F081945	N/A	MFSCLSTEECFEEFRNHFSQIFDADSTKSLSAASFIHENEESFVETIISLVFYEI
Ga0272421_10001337	F061401	N/A	LNNDQRVIREIKNRIKRVNDLSKTIFHRVTVVTQSVDHSKSDQLKSRDAVLTSVKEADILVESCFICHKSDHSSKECFDRSTRINAMNNEYDHFDFDSNFDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272421_1000133

Overview

Ecosystem & Geography

Associated Families

Sequences