NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000125

Scaffold Ga0272421_1000125


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000125 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112556
Total Scaffold Genes131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (58.78%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F013598Metagenome269Y
F017767Metagenome238Y
F017941Metagenome237Y
F021896Metagenome216Y
F044226Metagenome154Y
F055319Metagenome138Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_1000125112F017767N/AMKDVLISSTMSISDDFFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIA
Ga0272421_1000125117F017941N/AMKIADLKKNISESIYKQILETNEIDENCMLLREAIARDETQYEDIKLKNC
Ga0272421_1000125118F013598N/AMNFIINLFDSSKYNAILTIICRLSKKRHYISCITDDEDITVEKTAEMLIQ
Ga0272421_1000125122F044226GAGMMKFSDNFNIFSITSMIFFYFNKEFHSRMSFDSDTTDYETTCERLEARKANNIVI
Ga0272421_1000125123F087980N/AVIENSVEIFRVMQELQNQVRQHDVIISFSFIVFSSSVYIELNSQSLATIAQIVAQILNNQSFFIVHFSANSVAVFIASRFEKLLDISEYERNKDQLNA
Ga0272421_1000125125F001951N/AMMTMTKFRFIDSSRNERERDKDTVETIVTEMMIFEFKKLLVNAEMFLTLTNEMITKMKRD
Ga0272421_1000125126F055319AGCAGMIEVRVKRLRLVDKMICIQISERDLAQKLDFSCEQRDFFIYTDDVTVVDVHDTQSEELLI
Ga0272421_1000125129F021896N/AVTKNNFESEDFLKNVECNLTFLRSDKEYIFSDETSERDSYSTIVIDESSIEVRKI
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