Scaffold Ga0272421_1000124

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000124
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112906
• Total Scaffold Genes: 137
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (59.85%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F001951	Metagenome	612	Y
F021896	Metagenome	216	Y
F028978	Metagenome	189	Y
F055319	Metagenome	138	Y
F071806	Metagenome	121	Y
F087980	Metagenome	109	Y
F098339	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000124121	F098339	GAG	MIEFVDNNALFSVIFSISFFLNKDFHSRMSFEFDVIEYESFRERLQTAKVENISENMNKTLKFARESLVKTREQMMKQVNKHRKEVDYEIESKMFLNERNIVTARSFVTILATHLCW
Ga0272421_1000124122	F028978	N/A	MKIADLEEKENDESIYQLILEANRINENYILLREVVLKDEAQYEDTKLRDCRVQNEILY
Ga0272421_1000124125	F071806	N/A	MKLQSQIIILNSVQLHLFSIISAFSQILAFMNLEIEEFDVEDIKSQLDQDTLNLDEDSADIFIQTL
Ga0272421_1000124127	F021896	N/A	VTKNNLESEDFLKNVECNLTFLRSDKEYIFSDETSERNSYSTIVIDESSIEVREI
Ga0272421_1000124131	F055319	AGCAG	MIEVRMKRLRLVDKMICIQISERDLAQRLDFFREQRDFFIYTDNITVVDVHDMQSEELLI
Ga0272421_1000124132	F001951	N/A	MMTMTKLKFIDSSRNKKERDEDTVETTVTEMMIFELKELLVNAETFLTLMNEMMTKTKRD
Ga0272421_1000124134	F087980	N/A	MKSSHNLLIDDERAVEQFAQSVIENSVEIFRAMQELQNQVRQHDVIISFSFIVLNSSVYIELNSQSLAMIAQIVAQILNNQSFLVVHFSANSVAAFIAFRFEKLLDISEYERNKD
Ga0272421_1000124136	F001253	AGG	MKDVLISSTTSSSNDLFASKSLTIECVLFSNEISYSLKSLIDTEAADYSFIDELIAQNVYDHLQIESLPLIKLKSIRRFDNHYAKKLIIHAIYSNLTVQDHMKRFVSMLITRLDQHQMILRKT