NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000121

Scaffold Ga0272421_1000121


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000121 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115216
Total Scaffold Genes154 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)92 (59.74%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021452Metagenome218Y
F021896Metagenome216Y
F061402Metagenome131Y
F065269Metagenome127Y
F071806Metagenome121Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_1000121102F021452N/AMSDDSFDFKSFTVDVILNSLEKIFRSLALINTEVTDMTFIDESLMSELCERFDIQSISLSKSKSIQSYDEIFDQKSITHALYTLIMIQEHKNEMILLLITCLNQHKIIIENL
Ga0272421_1000121105F065269N/AMARSSESVSIARYELRNARRESLLSQNRTASEEEDTNALSNTEEKNTNTLLFDHEMIKISISTELNA
Ga0272421_1000121142F071806N/AMKLQSQIIALDSVQLQLFLIISAFLQILTFMNLEIEEFDIENIKSQLNQDTLNLDKDSADILTQTL
Ga0272421_1000121144F021896N/AVTKNNFESEDFLKSVKCNLTFLKSDKEYIFSDETSERSSYSTIVIDESFIKVHEI
Ga0272421_1000121147F086377GAGLILDCDSIQISIVHAEVKFFFEFLDEENKDNHLKATDLNEIFTQIFIQITTKF
Ga0272421_1000121153F001951N/AMIMTKLKFIDSLKNEKERDEDIVEMTVTEMMIFELKELLVNTKMFLTLMNETIMKMKQD
Ga0272421_100012196F061402N/AMTEFVDNNAISSSIEQSAFFLNKSFHSRMSFDSNSTEYEITQARIEANKAKNIFEHMK
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