Scaffold Ga0272421_1000100

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000100
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132525
• Total Scaffold Genes: 139
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (28.78%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F042102	Metagenome	158	Y
F071806	Metagenome	121	Y
F075494	Metagenome	118	Y
F080690	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000100108	F075494	N/A	VINNVEKTFVHSISMNRYSAEHVESRLQDEIHXXTXMINDVKKMFIHSVSEXRYSAKHVKSRSQNEIYCTXVINEIKKMSVHNVNENINTCSAVHVRSMLLRIMILAVQEIHLNEVHFLKDKIFQFESTTLKSTDVKTSTHKNHNVVEKQLNSVAETIDYKQLVSHAIVSVRRRDLFTXNCVVEDNKIALYXX
Ga0272421_1000100118	F020121	GAG	MKKLTEHLCDEMLIVQIIYEFNVNFFHRSCSRYFVEDEVXLNARNLSIARLAVKLDDHNVDFFKIKRVFKNNSLIIELNLSAFMKIHSIFHVILLSHITSDFLSNQHQKSQEFVVIKNDERFXYVNSILNFKRDRHYNSSLLKYYIDXEDHFSTXKSFHLLNNCEQALNEYHFVNSVAEESHVLSCVMSQWQCQEL
Ga0272421_1000100127	F080690	N/A	MKLSHNLLIDNERAVEQFTQSMIENSVKIFRVMQELQNQVXQHDVITSFSFIIFSSSIYIKLNSQSFAIIAQIIAQILNNQSSFIIHFSANSVAVFIAFRFKKLLNIFKYEKNKDXLNAXKQSLIQRMNVNDDHYLSHQVKIVYVKSXLIIDKKTHNLMNQYXVNDLCIIFIFADXQHKLHHCCDNSFKTENAHLYLREILKQDMNSFADYYNLFYQKKEHSLMKDFSLIDCLKRNVNYF
Ga0272421_1000100128	F001951	GAG	MTMMKFRFIDSSRNKKERNEDTVKTTVTEVMIFEFKELLVNAEMLLTLMNEMMMKMKRD
Ga0272421_1000100129	F009580	GAG	MICIQISEHNLAQKLNFSRRQXDFFIYIDDITVVNIHDTQSEELLIXAFFSNFAXMLQFAVVTQLSLVADFLDFRNDQSLILNDDNDEV
Ga0272421_1000100130	F021026	N/A	MIVFYILRQAQSKVLTLVLIDSEVFAYVFMNKFFAQQHHFFLHQLTHFHRLXEFHDQVALINDIIHVVEITMILDEHIERLFFYVIELNQYFIIMSLSXLHHHVIDVNFEHNILILSFFFCLNYCCQFLVKIYNFNQQEENFSLEVNKVAFLLSRSQFAHKKQLSSXITHKKQFSLQIIHKKQFNLQIIYKKQFSIQFTCKK
Ga0272421_1000100134	F071806	N/A	MKLQSQIIILDSVQLHLFSVISALLQILTFMNLEIKEFNVENIKSQLDQDILNLDEDSVDTFTQTLXK
Ga0272421_1000100136	F020121	GAG	MKKLTEHLRDEMLITQIIYEFNVNFFHYSCFKYFVEDEVXLNACNLSIAHLTVKLNDHNVDFFKIKHVFKNNFLVIELNLSVFMKIYSIFHVTLLNYITSDSLSSQHQKLQELIIIKNDEKFXYVNSILNFKHDKCYNSFLLKYYINXEDHFFTXKSFNLLNNCEQALDEYYLVNSVVEESHVLLCVISQCQCQEL
Ga0272421_100010042	F042102	N/A	MTRSSESASIAHYELQNARRESLLSQNXTASEEEDTNVSSDTEEKNMNTLLFDHEMIKISISTELNAXINTHEADDIVAFIKYMYQQHDIEIEIYNDMIQMLEDVNKTNITFKIMQTRLQKEVRNKNVIIHHLETASSRQSTLISEDHFLKSIKLLNFSLFKDSTQNVDNXLFXMXNKLKINKNYFSIEELKIAYIESRVSEAAIKHIASXMRNMILNFFLEVEEVLSIINKMYNDLNHHHTTQRQYLKLYQNKIFFHEFXMKFQRFNAELKYNNKTLLDDLQHKISSDLQXAMLNYEXITNLNEFVDICMQVNVRLIELNVQSVVKASMI