Scaffold Ga0272421_1000098

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000098
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133527
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (27.66%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F004755	Metagenome	424	Y
F009377	Metagenome	318	Y
F019260	Metagenome	230	Y
F028368	Metagenome	191	Y
F075494	Metagenome	118	Y
F076668	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000098140	F019260	N/A	MSQFENISNTLSSTSLVSINELITVAQFRTHVNNAFEAXYTFLIELQTXFNDIITQYINXVSVCQQEHEQTQIELKQSQINNEILSEMIQELKSMSRINIKSEKYSNSELYIKERENKLNQFIFKLISKLKLNVNHYSTLESRLLYEYSRLSRNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEITQRFISALRMRNCIFIEYLFDFQQHIDAIEYDVVTRKFNLKNKLFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYFVKYATFSTDSKATISSSRNFMNLSIVNMKKRDSLTLEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLRIISLFALAISINNLAFNTSFILRKV
Ga0272421_100009822	F075494	GAG	MFIHNVSEQKYSAKHVKSKSQDEIYCTXVINEVEKMFAHSINENTSMCSAMHVKSMLLRIMILAVQETHLNEVHFLKDRISQFKSTTSRSTNVETSTHKDCNVTEKQLNSVAETVNCKQLVSHAIVKVLTIHETTYNFSSKFIVELIKIL
Ga0272421_100009832	F076668	N/A	MTCLLPTSSFLTHASARKMSKSSMHLTDHYAIKETSVFKSTTTTKKIMHMSNALFTDILMLCNRKDATNQTLLRCVKFENIRRSQKISFSKXSLKDXLKRLCMIMLERTCYNMIFAFSVLSXVLFKKSLKTLCASLXKVSALLFRIITFVVEFSLTFCSMQTSTXQQFMSNASSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSVK
Ga0272421_10000984	F004755	N/A	LKELTQLFNDLNKKVNFRREYYNLIQRFKKFNEFYTQFQRLSFYLDYHKKQLIVDLKDKIHSRLQFIXVNQLVQSDSLKEIRFYLIYLNNNQRVIXKIKNKIKRVNDFSKTIFHRATVITQSVDHSKSDQLKSRDAILTSVKEADILIESCFICHKSDHSSKECLDRSTRINAVNNEYDRFDFDSNFDSKN
Ga0272421_100009861	F009377	N/A	MTRSTESESVSIAHYDFQNVRRESLLSQNRAASEEEDTNASLNTEKENTNALLFDHEMIKISINTELNAXINAHEANDIVIFIKYICQQHDIEIKIHNDMIQMLEDVNEINITLKITQTHLQKENKDKNVIIHHLKVASSRQSTSISEDYFSKLIKLLNSSLFEDSTQNVDNXLSXMXNKLKTNKNHFSIEELKITYIESXVSEAAVTILATHLCW
Ga0272421_100009863	F028368	N/A	MIIHSNLVDKVCKKLRIQSILLTKEKLIRNYDEKISKKIITHKILFNLIIESHKKLTVSMLIADINHHEVILSKLXINKNEILLNMQNDVIVFSNQLNTFISIFSISLNSKHSSXSRSSLFSSIIQTKISMMLKXLVQEESFLIRSIDAASFKTLLNRSKRNKIKVFALFMTNINKEITYNIQCNLNVLNVSSINEITQNLKDIKAKLSL
Ga0272421_10000988	F000597	GAGG	VTFIKNMMKNVLISLMMSMSNDSFASESLTTEYVLSSNEISYSLKSLMNIEAADYSFIDEVTAQIVCNQLQIELLTLIKAKSIQEFNNHYVKKLITHVIYLNLTIQDHTVDTAFILITQLKQHQMILEKTXMNKINLVINM