Scaffold Ga0272421_1000084

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000084
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 146757
• Total Scaffold Genes: 164
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (50.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040408	Metagenome	161	Y
F048019	Metagenome	148	Y
F055318	Metagenome	138	Y
F075494	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100008443	F048019	N/A	VNEHAFELFFAQAFVKALQDKSTVYALVMINVVEESIVEHQVKAMNNVTSRITNAFKTQTLLVELKEYENVFSIESADKLSLHEDHDHAIEITAESSYESLYNLSNTELATLRQYLDDALAKE
Ga0272421_100008445	F075494	N/A	MINNVEKTFVHNVSERKYSAKHVESRSQDEIYCTRVINEVEKMSVHNVSEYTSTCSAMHVRSMLLRVMILAVREMHLDEVHFSRDRISQLESTTSKSTNVKTSTHRDRNVAEKQLNSVAETVDCKQLVSRAIVRVLTIYETAYDFSSKFVVELIKILQQENEFAVRLRADETTNIRKSDVEA
Ga0272421_100008448	F040408	N/A	MYDYELIFDIYIENNAMKEEVSAAKERVEMLQDVRNTLTQ
Ga0272421_10000848	F055318	N/A	MLRDDEALCVDRVQSFRDRADFNNLNAHATSNLHTDEKVK