Scaffold Ga0272421_1000077

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000077
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156494
• Total Scaffold Genes: 176
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (23.86%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F021216	Metagenome	219	Y
F021896	Metagenome	216	Y
F038009	Metagenome	166	Y
F038484	Metagenome	165	Y
F041516	Metagenome	159	Y
F058565	Metagenome	134	Y
F064254	Metagenome	128	Y
F094622	Metagenome	105	Y
F102180	Metagenome	101	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000077100	F021216	N/A	MKSXMKSNAMKREHHELEKAFRNHERSDDDHSNDTLNEHIESISSCDIIKESNEREKK
Ga0272421_1000077105	F041516	N/A	MIQKAIHIHEAYNLSLKDYKVIHEKESLSDIKKMLHMLRECILVENFNLHHFT
Ga0272421_1000077109	F102180	GAG	MMTAMKINXKLNKRLKELTLIITHHEELKELIAKMIHFTDVMTENQECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQQVQIIHESI
Ga0272421_1000077116	F038484	N/A	MLSLVEIIVKKKMHHLHLDCIFASSXMKTFRSIIFLMMSNQEIMXITFVKQTHISLHACLISCIQSLTXLCSMILFYNMFKXTCNELVYVSVSKVSMLTLLNASATXCRVXFXSVSSLHSLLNSSSFLSRXCQTDASNAISDLTTAEYTCFAFVKIAFYVKTSRXLSVNIFVTXFISIYXRCASYCSFMFSCIFRTCMSDFNLITELFIYMLIIMLNFFEFLVKCINSYFSDADVASXVXAHFAQTSCALLSVLQISSVNLL
Ga0272421_1000077133	F064254	N/A	MIIVVALMIFKSFLKFMMFSSHCIAFHSTFHLKHVNKMYLINIXSLLHLHVIIMTSSTHLLCRNXLKSIFLMHSCVNNALXNFAXFLCSCRCRCVIFDVRYQKXTLLNFFFQTILYVYLICFCMSVSFIITSMRXCSVNDRNKSCASLIILFITLFSSTSACLIIQCNFNVTS
Ga0272421_1000077134	F021896	N/A	MKNNFKSEDFFKKIECNLIFLKSDKEYIFSNEMSERDNYSTIVINESFIKVHEI
Ga0272421_1000077143	F104134	N/A	VKXLDFFDLLTRLQFSVKSVXLTSSVFFLISLLFIILIMTSHFLRSDDKLSLRRYFLVAISSLVMFAHDVIFVERRVLLCICNCLFSSXTDVFSFCTFFTMNTFXFTXCFSSESSXRRXISFNAISFHEXSLLFSFFNVDIFISKLIMLAMFSSSLCKHFNLAFLFSCDKSMSLAIIFESTLLQFMQFIIVQSSFKFTLSCL
Ga0272421_1000077151	F038009	N/A	MSSMIKALNFQLNYVKLYKRLIELICLKDNRSSKEKRISTLDFXXVFFLNDLKNMIKSFLFQTRDKTEXSLFLVNKLNISXLLISKRRVILLFVSKRETELLLVSELKTELLLVSELKTELLLSSKXETRLLLASELSAELLLVNNL
Ga0272421_1000077154	F009580	AGCAG	MIEVRVKRLRLVDKIICIQIFERNLVQKLNFSCRQQDFFIYTDDITVINVHDMQSEELLIXAFFSDFAXMLQLAVVAQLSLVADFLNFRNHQSLILNDDNDEA
Ga0272421_1000077159	F001951	N/A	MMKFKFINSLKDEREKNEDIVKTTITEMMIFELKKLLINAKIFLTLIYETIKKMKXD
Ga0272421_10000774	F104134	N/A	MIRSLXSVNTSAILCKICSINFFCIFFISLLFIILIMTFHFLQSNDRSSLSHYSFIAISSLVMFAHDVIFVKRCMLFCVCNCLLNSXTDVFSFCTFFAMITFXFTLCFSSELSXRHXISFNAISFHEXSLLFFFSNVDIFISKSIMLTMFFSSLREHFNLASLFLCNE
Ga0272421_100007767	F094622	N/A	MLINQHHFDIFTLKQKVYLNDNNSRKNVMMITMKINXELNKRLKKSTLIITHHEELKELIAKMKHFADVATENQEYHEKIYKVYNDNQTFLKAVKVMISIKDQTHLQXIQIAHESI
Ga0272421_100007787	F058565	N/A	MNCMNCSNADSKMIASDVNSSQENRDARLKCLRNDEENIANIIDLLIKISTLEKEKSKDHSXKEIALKLI
Ga0272421_100007794	F038484	N/A	MRMLSAFXKSSHIFIILLLRCNLCAENALTFATHSLYFSHCXFHXSLXYCAIAMLSLVEIIVKKRMHHLHLNCIFTSSXMKTFRSIIFLMMSNXEMTXITFVKRTCINLHACLIFCIRSSTQLCSMILFCNMFKXTYNELVYVSVFKVSMLTLLNASATXCKVXFXIVSNLHSLLNSSSFLSHXCQIDALNAISDLIIVEYTCLAFVKIASHVKTSKXLSVSILVMXFIFICQRCVSHYSFMFSCIFRICTSDFNLITELSIYMLVIMSNLFNFLVKCVSSYFSDANVASXVQAHFAQTSCALLSVLQISSVNLS