Scaffold Ga0272421_1000065

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000065
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 165755
• Total Scaffold Genes: 171
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (24.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F048017	Metagenome	148	Y
F070710	Metagenome	122	Y
F096306	Metagenome	104	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000065135	F048017	N/A	MKNKQLSQQQVNYLNILSKFNFQIIFRSGKMNTKVDALIRMSLTNISESAQRLENRFQTILIFDRINVLSIESKANLYQRVRMINQTDELCNEYKQAMNENKLKFHITKLKNCEIIDNVLFRKDLLXVSKNMHTKLLQEVHDQSSISHFDNRQIINLVQRFYYXSNH
Ga0272421_1000065136	F008115	N/A	MNFITELSLSEDYNVICTIICHLIKECHYVSCHXEDDDISIEETIXIMLXNVYQLHDLLSSIVSNRDSQFISTMXKSLCKQLRITASLFTVYHSEINDQSKXVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSITSMILFYFNKEFHSRMSFDSDTTDYETTHERLKARKADDIVIXMKKLLNFDRQQLKKTKLIIEVQINKHRXDVIYEVNDXVXLSFRNIKTTRLCKDLKDKQLDLYQITVKVSIFYHLCLSVSMKYLHSMFSSKLLQSYSEDSLSEQHSESLRSITIEDNKHXKIDNILNFRRYQDQIQYKVKXIDLDRNDKXYYVDKEKFNDSEKVLNEFHKLYSNKSR
Ga0272421_1000065167	F096306	GAG	MYNNYAVDSLIIDDDSNEEKSCRDNSELQALMILFDIATLIATNLKIIFVESNDK
Ga0272421_10000657	F070710	GAG	MNNFMIKQSFLXILQYNIRKLLRIQESFLINREVREFNIVVIQKQDRNNNDLQSFNSAHNFFHLVKNSSFQSRTCIYVNKYLRFNQXIVETAESDICSIRILTCNADNKTQTLRLLNVYNLCSLFTIFTERFSIISHLNELLKNDCK
Ga0272421_10000659	F104134	N/A	MFVILCKICSINFFYISFISLLFIILIIISRFLRSDDKSSLKHYFLVVISSLVTFTRDVIFVERCVLFYVCNCLLSSXTNVFSFYIFFMMNAFXFIXCFSSELIQRCQISFNAISFHEXSLLFFFFNVDVFINKSIMLTMFSSSLHEHFNLTSLFSCNESTSLTIIFESALLXFVQFIIIQSSSRFTLSCL