Scaffold Ga0272421_1000048

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000048
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 199399
• Total Scaffold Genes: 228
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 108 (47.37%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F003820	Metagenome	466	Y
F005901	Metagenome	386	Y
F006206	Metagenome	378	Y
F013598	Metagenome	269	Y
F017767	Metagenome	238	Y
F055319	Metagenome	138	Y
F061401	Metagenome	131	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000048114	F005901	N/A	LHSYISIDELFEHLKEIYDELNKNRKCRREYNALRQADKSFNVFYFDFMKLFSYLKYNDCILLNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNSKQRVNYQLCSERCTVIVKVTVVSDKRVTSLSVTISIIDYVKSIISSISESVRSSIICYICKTLDHLFKNCSQLNKIDTSASHAFILHLHEIIISKNKENEKMSFENSKAKN
Ga0272421_1000048191	F055319	N/A	MIEVRVKRLKLIDKMIYIQIFERDLVQRLNFFREQQDFFIYIDNVTVVNVHDMQSEELLI
Ga0272421_1000048192	F001951	GAG	MKFKFIDSSKNERERDEDTVETTVTKMMIFELKELLINAKMLLTLMNETMMKMEQY
Ga0272421_1000048194	F087980	N/A	MFSYVEISSNYSFVQIKLSHNLLIDDECAVKQFTQSMIENSVEIFRAIQELQNQVRQHDVITLFSFIIFSSSIYIKLNSQSLMMITQIITQILNNQSFFIIYLSANSVAVFIASRFKKLLDISKYEKNKD
Ga0272421_1000048195	F003820	N/A	MKLFSYLEYDDCILMNDLQNKINNHLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVVSDKRATSLSVTTSIIDYVKSTISFISESARSSIICYICKILDHLFKNCSQLNKINTSASHAFISRLHEIVISKNKENEKMSFENSETKN
Ga0272421_1000048196	F017767	N/A	MKDVLISSTTSRSNDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVC
Ga0272421_1000048200	F013598	N/A	MNFIINLSDLSEYNAILTIICRLSKERHYISCITDVEGITVEKTAEMLIQ
Ga0272421_1000048205	F006206	GAG	LCKLDEILSKENYFEKSFLIDAHLISQNQSFSLRSLIDSDSVIYTIIHSNLVDKVCEKLKIQSISLTKEKLIRNYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKL
Ga0272421_1000048206	F061401	N/A	LNNDQRVIREIKDKIKRVDDLSKTIFHKATVVTQSVDHLKFDQLKSRDAVLTNVKKADILVESCFICHKSDHSSKECLDRSTRINAVNNEYDRFDFDSNFDSKN