Scaffold Ga0272421_1000047

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000047
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 201107
• Total Scaffold Genes: 224
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 126 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021896	Metagenome	216	Y
F074204	Metagenome	119	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100004773	F021896	N/A	MMKNNLESEDFFKNVECNLTFLRSNKEYIFSDEMSERNNYSTIVIDKSFIEVCKI
Ga0272421_100004778	F074204	N/A	MIVFYILRQAQSKVLTLALIDNEVSAYVFMNKFFTQKHHFFLHQLIHFCRLQEFDDQVTLINDITHVVEITIILDEYIEKLFFYVIKLSQYLIIMSLS
Ga0272421_100004779	F001951	N/A	MIMTKLKFINLLKNKRERDEDTVETTVTKMMIFELKELLVNTKIFLTLMNETMMKMK
Ga0272421_100004781	F087980	N/A	MKSFHNFLIDDERAVEQFAQSVIKNSVKIFRVMQKLQNQVQQHDVIISSSFIILNSSIYIKLNSQFLAMIAQIIVQILNNQSFFIVHSFANSVVVFITSRFEKLFDKFEYERDKDRLNV