Scaffold Ga0272421_1000045

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000045
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 210936
• Total Scaffold Genes: 263
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 149 (56.65%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F013598	Metagenome	269	Y
F021896	Metagenome	216	Y
F032102	Metagenome	180	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100004510	F005901	N/A	VIFRLEDDAAEHIFARCQHDALHSYISINELFEHLKEIYNELNKNRKCHHEYNALRQADKSFNVFYFDFMKLFSYFNYDDCTLMNDLQNKINNRLQNVLSICSKNFTSLTRLRIFLQDVNSKQRVNYQLRSKRCTVIVKVTVVSDKRATFLSVTTSIINYVKSTISSISESARSSIICYICKTFDHLFKNCFQLNKINTSASHAFTSRLHEIVISKNKENEKISFDDSEAKN
Ga0272421_100004511	F000597	N/A	MKDVLISSTTSMSDDSFASESLTTEYVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHIIDIASMLITQLNQHQMILEKT
Ga0272421_100004515	F032102	N/A	MKIADLKKNISESIYKQILEINRIDENCTLLREVIARDETQCENIKLKNCRVQNEILYHDNQL
Ga0272421_100004516	F013598	N/A	MNFIINLSDSYDYNAILTVICKLSKERHYISCIIDDKDITVEKTAEMLLQ
Ga0272421_10000452	F021896	N/A	VTKNNLESEDFLKNVECNLTFLRSDKEYIFSDETSERNSYSTIVIDESSIEVRKI
Ga0272421_10000459	F087980	N/A	MIENSVEIFHVMQELQNQVRQHDVIISFLFIIFSSSIYIKLNSQFLAMIAQIIAQILNNQSLIIIHLFANSVAVFIVSKFKKLLNISEYEKNKDQLNA