Scaffold Ga0272421_1000043

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000043
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 212746
• Total Scaffold Genes: 250
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 148 (59.20%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F037508	Metagenome	167	Y
F070712	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_10000432	F001253	GAG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIEPLSLIKLKSIRGFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLDQHQMILEKT
Ga0272421_1000043228	F003820	N/A	MKLFSYLEYDNCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVVPDKRATSLSVTTSIISYVKSTISSTSESARSSIICYICKTLDHLFKNCSQLNKINTSASHAFILRLHEIIISKNKENEKMSFENSEAKN
Ga0272421_1000043229	F000597	N/A	MKDVLISSTTSRSDNSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFNDHYAKKLITHAIYSNLTVQDHTIDTASMLITRLDQHQMILEKT
Ga0272421_1000043241	F070712	GAG	MSDIKEKKSLNKVRKQVIFAEKRDSLNFYRKIEVITFVDYSKSHDAILTNVKDINLQAEICFICYKSNHTTRECSDRTSRVNALENDEFDRFTLNSESDSDSKN
Ga0272421_1000043245	F037508	N/A	VIFRLEDDADQQIYAKRRVDAFSLYQSLSELLKHLKEIYEDQNLIRKCRREYVALKQLNKLFSSFYSEFTRIFSFLNYDDVTLMNDIQNKINNRLQNALSVCFIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQ
Ga0272421_1000043246	F001253	GAGG	VTFIKDAMKDVLISSTMSSSNDFFASKPLTIECVLFSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRGFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLIIRLDQHQMILEKT