Scaffold Ga0272421_1000041

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000041
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 214804
• Total Scaffold Genes: 253
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 154 (60.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021896	Metagenome	216	Y
F025887	Metagenome	199	Y
F065269	Metagenome	127	Y
F074204	Metagenome	119	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100004112	F021896	N/A	VTKNNLESEDFLKNVECNLTFLKSDKEYIFSDETSERSSYSTIIIDESSIEVRKI
Ga0272421_100004115	F074204	N/A	LKLFEFDSIFKDNHMIVFCILRQAQSRVLILALIDNEVSAYVFMNKFFAQQHHLLLHQLTHSRRLREFNDQVALIDDIIHVVEITMILDEHIKRLFFYVTELSQYFIVMNLS
Ga0272421_100004118	F087980	N/A	MKSSHNLSIDDERAVKQFAQSVVENSVEIFHAMQELQNQVQQHDVITSFSFIVLSSSVYIELNSQFLATIAQIVTQILNNQSLFIVHFSANSVAVFIASRFKKLFDISEYEKNKDRLNA
Ga0272421_100004131	F025887	N/A	MSDDSFDFKSFTVDVILSSLEKIFRSFALIDTEVTDMTFINESLVSELCERFDIQSISLSKSKSIQLYDEISD
Ga0272421_100004134	F065269	N/A	MTRSTESESVSIARYDFQNVRRESLLSQNRTASEEEDSNASLNTEEENMNTLFFDHKMIKININTELNA