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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031909 Open in IMG/M |
| Scaffold ID | Ga0272421_1000037 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 228943 |
| Total Scaffold Genes | 284 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 163 (57.39%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F021452 | Metagenome | 218 | Y |
| F021896 | Metagenome | 216 | Y |
| F055319 | Metagenome | 138 | Y |
| F074204 | Metagenome | 119 | Y |
| F079402 | Metagenome | 115 | Y |
| F087980 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272421_100003712 | F021896 | N/A | VTKNNLESEDFLKNVECNLTFLKSNKEYIFSDETNERDSYSTIVIDESFIEVREI |
| Ga0272421_100003714 | F074204 | N/A | MIVFCILRQAQSRVFALALIDSEVSAYVFMNKFFAQQHHLFLHQLIHSRRLREFDDQVALIDDITHVVEITMILNEHIERLFFYVTELSQYFIVMSLS |
| Ga0272421_100003715 | F055319 | AGCAG | MIEVRMKRLRLVDKMICIQISERDLAQRLDFFREQRDFFIYTDDVTVVDVHDTQSEELLI |
| Ga0272421_100003716 | F001951 | GAG | MTMTKLRFIDSSRNERERDEDTVKMTVIEVMIFELKELLVNAEMLLTLTNETMMKTK |
| Ga0272421_100003718 | F087980 | N/A | MKSPHNFSINDERAVKQFAQSMIENSVEIFRAMQELQNQVRQHDVITSFSFIVLSSSVYIELNSQSLATIAQIVAQTLNNQSFLVVHLSANSVAVFIASRFKKLPDIFEYERNKD |
| Ga0272421_100003721 | F079402 | N/A | MRNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIAFRMRNTITNSFLEAEEILSIINKMYDDLNQHHTTQRQFLKLYQNKIFFHEF |
| Ga0272421_100003722 | F021452 | GAG | MLISCFINILNDSFDFKSFIVDVILSNLEKIFRFLALIDIEVTDMTFIDDSLISELCEHFDIQSISLFKSKLIHSYDEIFDRRSITHALYISVTIQEHKNEMMSLLITRLDQHKIIIDNL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |