Scaffold Ga0272421_1000036

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000036
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 230001
• Total Scaffold Genes: 236
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 138 (58.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F055319	Metagenome	138	Y
F074204	Metagenome	119	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000036227	F087980	N/A	MKSLHNLSIDDERVVKQFAQSVIENSVEAFRAMRELQNQVRQHDVIISFLFIVLSSSVYIELNSQFLATIAQIVAQILNNQSSLIVHLFANSVAVIIASRFKKLFDISEYEKNKDRLNA
Ga0272421_1000036229	F001951	N/A	MTKLRFIDSSRNEKERDEDTVETTVTKMMIFELKELLIDAETLLTLMNKTMMKTKRD
Ga0272421_1000036230	F055319	AGCAG	MIKVRVRRLKLVDKMICIQISERDLAQRLNFSCRQRDFFIYTDDITVVDIHDTQSEELFI
Ga0272421_1000036231	F074204	N/A	MIVFCILRQAQSRVFVLALIDSEVFAYVFMNKFFAQQHHLFLHQLTHSCRLREFDDQVALIDDITHVVEITMILDEHIERLFFYVTELSQYLIVMSLS