Scaffold Ga0272421_1000035

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000035
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 241368
• Total Scaffold Genes: 297
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 174 (58.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008668	Metagenome	329	Y
F021896	Metagenome	216	Y
F025887	Metagenome	199	Y
F041516	Metagenome	159	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_10000352	F008668	GAG	MMEFSDNFNIFSITSMIFFYFNKEFYSRMSFDSDTTDYETTRERLEARKADDIVIQMKELLNFGRQQLKKTKLIIEVQINKHRRDVIYEVDD
Ga0272421_1000035250	F021896	N/A	MMKNNLESEDFLKNVECNLTFLRSDKEYIFPDETSERNSYSTIVIDEFSIEVREI
Ga0272421_1000035260	F102181	GAG	MIIVHVHALYQTLLSCIQSIFVLLIFKYVEKLLKSRSDDDSDRICKKMNNERRLIVQDLCDDLSYHCKKLRIQFYID
Ga0272421_1000035267	F025887	N/A	MSDDSFDFKSFIIDIILSSLRKIFRFFTLIDTEVIDITFIDESLMSELCECFDIQSILLGASIERVIWV
Ga0272421_10000355	F041516	N/A	MIMLQTLTDNTQMTQKVIHIYKVYNSSLKNHEVIHEKESLSDIKKMLHMLKECVLVEDFNLHYLT