Scaffold Ga0272421_1000029

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000029
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 248117
• Total Scaffold Genes: 272
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 144 (52.94%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008668	Metagenome	329	Y
F019260	Metagenome	230	Y
F021896	Metagenome	216	Y
F038010	Metagenome	166	N
F044226	Metagenome	154	Y
F048019	Metagenome	148	Y
F055318	Metagenome	138	Y
F055319	Metagenome	138	Y
F089603	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100002917	F048019	GAG	VKALQKKFTVYAFIIINVVKESIIEHQVKAMNNVMSCITNALETQILFIELKEYKDVFLIKSINKLLLHENYDHAIEITAKLSYESLYNLLNIKLATLRQYLNDVLAKE
Ga0272421_10000292	F008668	N/A	MILFYFNKEFHPRMSFDSDTTDYETTRERLEVRKADDIVIRMKELLNFDRQQLKKTKLIIEVQINKHRRNVIYEVDD
Ga0272421_100002930	F055318	GAG	LNDIEALRDDEALCVDRVQSFRDYADFNNLNAHATSNLYADEKVK
Ga0272421_100002940	F044226	N/A	MMKFSENFNIFFVISMISFYFNKDFHSRMSFNSDTTDYEITHERLEARKVNDIII
Ga0272421_100002959	F089603	AGG	MYIDASQIRKKIAEIETETETAVIFTHELVRFSKATSVSDKIITTKAKLQAISDAIAICSEKALKNSGI
Ga0272421_100002976	F008668	GAG	MSFDSDTTDYETTYERLEARKADDIIIQMKELLIFDHQQLKKTKQIIEAQINKLSRTES
Ga0272421_100002982	F038010	N/A	MNNDHLVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHSLLCFSLSEICILQKFDDQSVVFDSITHYALVKLRVSSEKLEEILFYVTQLSQFSVVLDLP
Ga0272421_100002983	F019260	N/A	MIQELKSMSKINIKSEKYLNSELYIEERENKLNQFIFELISKLKLNANHYSTFESRLLYEYSRLSRNAVAQALSRMTVQHDKLITIEQLVVLLRQVFDDSDKQEIAQRFISALRMRNHIFIEYLFDFQQHIDAIEYDVVTQKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLLKSKAVIHSVSVISTVLAYLVKYVTFLTGSKATILSSKNLMNLSIINMKKRGSLTLKKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLRVVSLFALAISIDNLAFDTSFVLKKA
Ga0272421_100002988	F021896	N/A	VTKNNLESEDFLKNVECNLTFLKSDKEYIFADETSERDSYSTIVIDESFIKVREI
Ga0272421_100002991	F055319	AGCAG	MIEVRMKRLRLVDKIICIQIFERDLAQKLNFSYEQQDFFIYTDDVTVVDIHDMQSEELLI