Scaffold Ga0272421_1000026

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000026
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 251725
• Total Scaffold Genes: 308
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 163 (52.92%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021452	Metagenome	218	Y
F021896	Metagenome	216	Y
F055319	Metagenome	138	Y
F061402	Metagenome	131	Y
F071806	Metagenome	121	Y
F087980	Metagenome	109	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000026238	F087980	N/A	MIENSVKIFCIMRKLQNQVQQHDIIISFLFIILNFSVYIKLNSQSLAMITQIITQILNNQSLFIVHLFANSVAVFITFRFKKLLNIFKYKRNKD
Ga0272421_1000026241	F055319	AGCAG	MIEVRVKRLRLVDKMIYIQIFERDLAQKLNFSCRQQDFFIYTDDIIVVNVYDTQSEELFI
Ga0272421_1000026250	F021896	N/A	MKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMSERDNYSTIVINESFIKVHEI
Ga0272421_1000026257	F102181	N/A	MKEIMIIVHVHALYQTLLSCIQSIFVLLIFKYVKKLLESRSNEDNDKICKKMNNEKRLIVQDLCNDLSYYCKKLRIQLYIN
Ga0272421_1000026259	F001951	N/A	MMIMTKLKFIDSSRNKKEKDENTVEIIITEMMIFKFEKLLIDAKIFLTLINETMMKMK
Ga0272421_1000026263	F021452	GAG	MLISCFISMLDDSFNFKPFIVNVILNSLEKIFRFLALIDIKVTDMMFINDSLISELCECFDIQSISLFKSKSICLYDETLDRRSITHALYISVTIQEHKNEMMSLLITRLDQHKIIIDNL
Ga0272421_1000026268	F061402	N/A	MTEFVDNNAISSSIEQSAFFLNKNFHSHMSFDLNSTEYEIIQARIQASKAENIFEHMK
Ga0272421_1000026274	F021896	N/A	MIKNNLESEDFLKSVKCNLTFLKSDKEYIFSDEMSERDSYSTIVIDESFIKVHEI
Ga0272421_1000026275	F071806	N/A	MKFQSQIIILDSVQLHLFLIISALLQILVFMNLEIEEFNIKDVKFQLNQDILNLDEDFADIFTQTL
Ga0272421_1000026280	F102181	GAG	MIIIHVHALYQTLLSCIQSIFVLLILRYVKKLLESKSNKDSNRVCKKMNDKKKLIVQDLCNDLSYHHEKLRIQLYIN
Ga0272421_1000026301	F021896	N/A	MMKNNLESENFLKNVECNLTFLKSDKEYIFSDEMSEQDSYSTIVINESSIEVREI
Ga0272421_1000026302	F071806	N/A	MKLQSQIITLNSIQLHLFLIISAFLQILVLMNLEIKKHNIEDVKSQLDQDTLNLDKDSADTLTQTL