Scaffold Ga0272421_1000025

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000025
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 254436
• Total Scaffold Genes: 307
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 150 (48.86%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F017941	Metagenome	237	Y
F036035	Metagenome	170	Y
F040408	Metagenome	161	Y
F041516	Metagenome	159	Y
F048019	Metagenome	148	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000025161	F048019	N/A	MNEHAFKLFIAEDFAKALQDEFTVYDLVMINVIKESIIEHQVKAMNNVMSRITNAIKTQTLFIKLKEYEDVFLTESADKLSLHEDHDQAIEITAESLYESLYNLSNTELTTLKQYLNNVLAKE
Ga0272421_1000025165	F017941	N/A	MKIADLKKNISESIYKQVLETNEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272421_1000025170	F000597	GAGG	VTFIKDAMKNVLISSTMSMSDDSFTSESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFNDHYAKKLITHVIYSNLTVQDHMIDIASILITRLNQHQMILEKT
Ga0272421_1000025171	F005901	AGAAG	MNDKLIVNVDQFDNETICIVYMLSRLEDDAAEHIYARCRHDSSRSYYSIYKLFEHLKEIYDEVDKNRKCHREYNALRQADKFFNIFYFNFIKLFSYLEYDDRTLMNDLQNKINNRLQNTLSVCLKDFTSLHQLKIFLQDVNSKQRVNYQLRNKRRTVIVKVTVVFDKRATTFLSAEMTSIINYVKSIIFSISESARSSIICYICKISSHLFKNCSQNKINISTFQAFFSRLHEIIISKNKENEKMSFKNNEAKN
Ga0272421_1000025172	F102179	N/A	VINEVKKISVYSVSENMSTCSAMHVRSMLLRIMILTVQETHLNEVHFSRDRISQFKSTTSRSIDIETLIYKDCNIVEKQFNFVAETVNCKQLVSHAIVRVLTIHEMIYDFSSKFIVELIKILQQEDEFAEKLKANKTMSI
Ga0272421_1000025181	F036035	N/A	MKNDAMQKDHHELEKASKNHERDNSDYSNDIIDKHTESISDCNVIKESDERERK
Ga0272421_1000025187	F041516	N/A	MIQKAIHIHEAYNLSLRDHEIIHEKENLSDIEKTLQMSKESILVENFNLHHFT
Ga0272421_1000025199	F040408	N/A	MYDYESIFDIHIKNDAMKKEVLAAKERVEMLQDMQNMLM
Ga0272421_1000025202	F102179	N/A	VINEVKKMSVHNISENTSTCSAMHVRSMLLKVMTLTVQEMHLDEVYFLRSRISQFESTTSRSTDVETLIHKDHNVAEKQLNFVAETVDCKQLVSRAIVRVLTIHEMIYNFSSKFIVELIKILQQEDEFAVRLRADETTSI
Ga0272421_1000025204	F048019	N/A	VNDHAFELFFAQVFAKALQNESTVYAFVMINVVKESIVEHQVKAMNNVTSCITNALETQTLLIKLKEYKDVFLIESVDKLLLHEDHDHAIEITAESLYESLYNLLNTELATLKQYLDDVLTKE