NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000009

Scaffold Ga0272421_1000009


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000009 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)354497
Total Scaffold Genes432 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)247 (57.18%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F008668Metagenome329Y
F044226Metagenome154Y
F059497Metagenome133Y
F061401Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100000918F059497N/AMFIKDIDRKIAYNTQCKLNIINVFSINEMTQNLENIKVKLSSKYQNFLNVFNQAQADKLSYHHSYNHKIKLTSDATLSYC
Ga0272421_1000009196F008668N/AMSFNSDTTDYETTCERLEARKANDIVIQMKELLNFDHRQLKKMKLIIEVQINKHK
Ga0272421_1000009197F044226GAGMIKFSENFNIFSIISITSFYFNKNFHSRMSFDSDTTDYETICERLEARKANNIVIQMKELLIFDHQ
Ga0272421_1000009204F061401N/ALNNDQRVIREIKNKIKHVNDLSKTIFHRATVITQSVDHVKSDQLKSHDAILTNVKEADILVESCFIYHKSDHSFKECLDQFIKINAVNKK
Ga0272421_1000009205F006206GAGLCKLNEILSKENYFEKSFLIDAHLISQNQSFSLCSLIDSDSVIYMIIHSNLINKVCKKLRIQSISLTKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKL
Ga0272421_1000009429F059497GAGMFIEDINREIIYNTQCELDVIDIFSVNETTQNLEDIKVKLSLKYQDFLDVFDQAQADKLSFYHSYDHKIELTSDVMSSRC
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