NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000007

Scaffold Ga0272421_1000007


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000007 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)374330
Total Scaffold Genes430 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)261 (60.70%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021452Metagenome218Y
F055319Metagenome138Y
F079402Metagenome115Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_1000007325F001951GAGMMTMTKFKFIDSSRNKRERDKDIVKATVTKIMIFEFKKLLINAKMFLTLINETMMKMK
Ga0272421_1000007326F055319AGCAGMIEVKVKRLRLVNKMICIQISERNLAQKLNFSCRQRDFFIYTDDVIVVDVHDTQSEKLLV
Ga0272421_1000007336F021452GAGMLISYFISMLNDSFDFKSFIVDVILSSLEKIFRFLALIDIEVTDMMFIDDSLISELCERFDIQSISLFKLKSIHSYDEILDRRSITHALYISVTIQEHKNEMMLLLITRLDQHKIIIDNF
Ga0272421_1000007337F079402N/AMQNKLKMNKNHFSIEEMKIAYVKSRVNETMIKHIAFRMKDMITNSFLEAEEILSIINKMYDDLN
Ga0272421_1000007340F001951N/AMMTIMKFKFIDSLKDERERDEDTVKTTVTDMMIFELKKLLVNAEMFLTLMNETMTKMKQD
Ga0272421_1000007342F102181GAGMIIVHVYVLYQTLLSCIQLIFISFILRYFKKLVESRSNEDSDRVCKKMNNKERLIVQDLCDDLSYYYKRLRIQFYIN
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