Scaffold Ga0272421_1000006

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000006
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 428687
• Total Scaffold Genes: 510
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 305 (59.80%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008668	Metagenome	329	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_100000619	F001951	N/A	MMIMTKLRFIDSSRKEKEKDEDTVEITVTEIKIFESQELLVNTEMLLTLMNEMMMKMK
Ga0272421_100000620	F102181	N/A	MKEVTIIIHVHALYQTLLSCIQSIFVSLIFKYVKKLLESRSDEDNDRIHRKMNDEERLIIQDLCNDLSYYHKRLRIQLYIN
Ga0272421_10000064	F008668	N/A	MSFDSDTTDYETTRERLEVRKADDIVIQMKELLNFDHQQLKKTKLIIEVQINKHRRDVTYEVND