Scaffold Ga0272421_1000005

Overview

Basic Information

• Taxon OID: 3300031909
• Scaffold ID: Ga0272421_1000005
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 450598
• Total Scaffold Genes: 551
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 324 (58.80%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F017941	Metagenome	237	Y
F025887	Metagenome	199	Y
F061402	Metagenome	131	Y
F096306	Metagenome	104	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_10000052	F017941	N/A	MKIANLKKNISESIYKQILETNKINENCTLLREAIAKDETQYENIKLKNC
Ga0272421_100000531	F025887	N/A	MSDDSFDFKSFTVDIILSSLEKIFRSFALINTKVINMTFIDESLMLKLCERFDIQSISLSKSKLIQLYNETSDQKSITYALYTLIMIQ
Ga0272421_100000536	F061402	N/A	MTEFINNNAISSSIEQSAFFLNKSFHSRMSFNLNSTEYEITRARIEASKAKNIFEHMK
Ga0272421_100000539	F061402	N/A	MTEFVDNNAISLSIEQSAFFLNKNFHSRMSFDLNSTEYEIIQARIEANKAKNIFEHMK
Ga0272421_100000543	F098340	N/A	MIEVVVYQTLVKNKKIKIFFLIISEINKALSSVKDFAKLNEMISVMSLNELKKKLLIVYHDFLNVFNREKTTQLSLH
Ga0272421_100000545	F025887	N/A	MSDDSFDFKSFTVDIILSSLEKIFRFLALIDTKVTDMTFIDESLMSKLCECFDIQLISLSKSKSI
Ga0272421_100000548	F096306	N/A	MFAMYDNCAVDSLIIDDNSNEERSCRDNSELQASIILFDIATLIATNVKIVFVESNDK
Ga0272421_100000549	F000597	N/A	MKDVLISSMISMSNNSFASESLITECVLSNNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLIT