NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307407_10436589

Scaffold Ga0307407_10436589


Overview

Basic Information
Taxon OID3300031903 Open in IMG/M
Scaffold IDGa0307407_10436589 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)947
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011645Metagenome288Y
F015886Metagenome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0307407_104365891F015886AGGAGGMFYTTPTDDGAIAVTCDRCLQSVGCLDPYAAADAITHHHCDPDAAMADPEDRGPALEHEQPALHLLAGLWVASCPTCGFQLTQARSQARAERRAARTRCPVCHEVA
Ga0307407_104365893F011645AGGAGMPKITIHVGGHERLEPAITKATPMGLLGTEAIVRLGPTMITGTATALRALADALVEAADLAEAYDADPDAFNQREQAE

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