NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307406_10166978

Scaffold Ga0307406_10166978


Overview

Basic Information
Taxon OID3300031901 Open in IMG/M
Scaffold IDGa0307406_10166978 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1589
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005142Metagenome410Y
F007136Metagenome357Y
F012851Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0307406_101669781F012851GGAGGMSVCSGIRADGGRCQAQAMRSSEWCINHHPDRTELRRRRASKGGRRGGRGRPIAELGALRDENAEIRRRLLEGELPPNVAAVAVQSINTDIRAVGATLKAREQEEITERLTELETLLVHDQAAFSAMDRCS
Ga0307406_101669784F005142GGAGLEVLEAMTAPTVDGQTSLPKRSGPKGLLPSTWLARTLRVSYVDCYGGGQEASGTLLDLYPAGPILNIGGAKTLLSWDRLAVVELVED
Ga0307406_101669785F007136GGAGGMVGSINARTLDYFGLLVGASIVALCSGVVATLCVKYELRWLAWFWAASFFGSALVAAYCLVKLL

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