Scaffold Ga0315312_1000015

Overview

Basic Information

• Taxon OID: 3300031898
• Scaffold ID: Ga0315312_1000015
• Source Dataset Name: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 392884
• Total Scaffold Genes: 430
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 306 (71.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7726
  • Long. (^o): 121.4938
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003098	Metagenome / Metatranscriptome	507	Y
F007209	Metagenome	355	Y
F102445	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315312_1000015148	F007209	GGCGG	MLRFKYSLTTDGERRCAKNEFYLQQTPKYKGYTEKIFKTLYTKEPLTIREISYHTGIDRRAVNGIITFNVMAGYIRRISLQM
Ga0315312_1000015161	F102445	AGG	MTDFRQVIFKMNRRQLLFATLMGSLAFIVRNAGLYVLIYEPFRFDPRWVFSLLAACWAGPEGGLIAGTLAAMKLPYPLIDLAAIPVHFFVGLMARLLILRNKNSLYACFLWPILGVPSYWLATFLFTPAKATIILVPVLIFIGVSSALLTFGVGLAVKKRANNLLGFLDV
Ga0315312_100001573	F003098	N/A	MAKSLEFIFQFPPIYGVFDTGYGVVYIFGEMHENAIEDVIVHETLHYVLLKLAGKRASLKLDRVYRQIVSG