Basic Information | |
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Taxon OID | 3300031898 Open in IMG/M |
Scaffold ID | Ga0315312_1000005 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 1096759 |
Total Scaffold Genes | 1339 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1046 (78.12%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia |
Source Dataset Sampling Location | ||||||||
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Location Name | Indonesia: South Sulawesi | |||||||
Coordinates | Lat. (o) | -2.7726 | Long. (o) | 121.4938 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F030967 | Metagenome | 183 | Y |
F079544 | Metagenome | 115 | Y |
F098575 | Metagenome | 103 | Y |
F102444 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315312_1000005351 | F098575 | AGGA | MENILLAMLKAEKDPSSQIGQVMVKNAEAYGAPGLGTMDLMKFLKGKLALDAKGKYKHPVRRSYWRSLKTLVRYGFIQVVLKKSPGRHGYLYRLTPKGRRKAEETWAKVSMFIDEYSKLL |
Ga0315312_1000005898 | F030967 | GAG | MNRLEEFEKRLKKLEKHGFEDTLTLVEILSSITFFGGLKMEQCRYAKEGQCGLFFLKSEAKKKLPIVTDCRIKDCKGELGHCHLELSNVTCVFCPCNTLEVECKSSNLSS |
Ga0315312_1000005904 | F102444 | GAGG | MLKIRGNRRALSPIFASLLILAIVTVLFIPVFIWSTGLTAETKSFWEVSGLIATERIVIEEVNLRGGVTSCTIYIRNIGKTAIIVDNVFVSAPDGTLYKYERAQAQFSTDFDSVVQGDLMTINIPDLGFTPTLGDTYTVKVYTTRGIGDTYQVVA |
Ga0315312_1000005905 | F079544 | AGAAG | MRIEHERSLEKIIISGLTLDDSQTNITHVFISNTGTITVKIRAIYVTNLTATILVCDPSIYMDTLIEPDESLRIPLSGGIIFEPEAKLIAATERGVKTSEYEGLLIFGPPKPRWKYDPNRFYIGPLMLQFNAFWYRKTSQDGVLDPNDPWHPGWTIPRGFGYCAWNITIMNIDDRNITINRYSSFTAVPVDSPSNELSWYLEPTSQTNYTQFIASNQTVDILYIWSAPKMFPEEGGQNSATKMTLPECRCMVFLTFFGLFHEHDGTTTTYAQTIPFEAAITVE |
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