Scaffold Ga0315312_1000001

Overview

Basic Information

• Taxon OID: 3300031898
• Scaffold ID: Ga0315312_1000001
• Source Dataset Name: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2229620
• Total Scaffold Genes: 2533
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1810 (71.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7726
  • Long. (^o): 121.4938
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015693	Metagenome	252	Y
F038080	Metagenome	166	Y
F078166	Metagenome	116	Y
F094709	Metagenome	105	Y
F102446	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315312_10000011153	F038080	N/A	MRMKRIKLFIHEPSINKVIGRELDLLLDDKASLVDAIREVDKIINSKGSFPVPNYRSLLHIIYNPVQNRFYKQVAITAYNQSGQMLSVRDDPKKELPEGTTVTLIPVGGCITEWEEAINYEEFLKSTS
Ga0315312_10000011170	F102446	N/A	MRKRYIAQNLIQKLSETTSHRLNMKETLFLGVVLKGLPVAYSLARMNAVVENLVPVVAHRPLYMQHYVESYFPSPEWETHFRERLNHCENILIVDDIVNTGFTKQKLESIVYPLTREIEVPSRFAALILNRKNLANQSFIGSDDIFTLQVNAMEVECDWGLITVPLWGLPVKEALLQCEEYFQRFWLNEKRFINIIY
Ga0315312_10000011265	F094709	AGGAG	MSLDEKSQKLGEMLAQIRNNFQGTIEAIDTFLNYLGKPLEPDHPELYEKLNWETRTGNKGEYQMLRKDNCNDTQVFNHLDAILKQNKNNITIGDYHYWAGEQGYIFRRKRKSSK
Ga0315312_10000011340	F015693	AGGAGG	MLYIIYFNLKNGVSEEDFVNNSKELSRYLKGKVEGLGPMKLYRHHNGANPRYYQMHMEMKDYGTWDRFFAFIEKDAKVAKLLQEWRKKLIDLNTHFDEFILEIPL
Ga0315312_1000001775	F078166	GAGG	LAFYENVLLQDANKGGYRLSIIARFEEPFPVQYVIRVSSPEGIEVDYMSTLEGFKKIGELLTALHYFAKTKLYPQDPIRLREVLTAENIKNFAEVLKAAKFSV